Toyota Repair: 4runner 2009 alignment, wheel weights, rear axles

Question
QUESTION: Hi,
Bought 2 month ago 4Runner (new) and 3 weeks later was hit.
Accident was right into the rear axle from the passenger side, rear right wheel turned about 25-30 degrees from that straight line.
Truck was in the shop for the 3 weeks -- rear axle was replaced and minor parts (door moldings).
Here is the question: how is alignment performed on that truck:
only front axle (front wheels), both axles , or thrust alignment?? (there is slight pull to the left now)
Second question: I am 38 and have been driving for 23 years,
but only cars (unibody). 4Runner feels little "jumpy" on the rear axle -- is that because it "body on frame"?   
Rear tires looks like balanced and my assumption that they should've been balanced at the factory before the truck was shipped and, since there is only 1500 miles on it i believe they still should be balanced. Or am I wrong??
Thanks a lot.

ANSWER: The alignment should be a four wheel thrust alignment, there are no adjustments on the rear possible only the front, I would recommend that all tires are rebalanced the accident may have caused some wheel weights to come off.

---------- FOLLOW-UP ----------

QUESTION: is there an equipment on the market that will show any deviation in installation of rear axle from 90 degrees to the straight line of the car?

Answer
Most alignment shops should have frame checking fixtures, these check the squareness of the frame and also the relationship between front and rear axles and the frame, it sounds to me that there is a misalignment somewhere between these components that an alignment machine may not detect.